In review/revision
Zapata F, Cerca J, McCarney D, Henriquez CL, Tiamiyu BB, McCormack JE, Reckling KR, Chaves JA, Rivas-Torres G. Darwin′s Overlooked Radiation: genomic evidence points to the early stages of a radiation in the Galápagos prickly pear cactus (Opuntia, Cactaceae). in review [doi]
Chanderbali AC, Dervinis C, Anghel I, Solits DE, Soltis PS, Zapata F. Draft genome assemblies for two species of Escallonia (Escalloniales). in review
Guevara-Andino JW, Dávalos LM^, Zapata F^, Endara MJ, Cotoras DD, Chaves J, Claramunt S, López-Delgado J, Mendoza-Henao AM, Salazar-Valenzuela D, Yeager J. Neotropics as a cradle for adaptive radiations. in revision CSH Perspectives in Biology. (^equal contribution)
2022
Anghel I, Jacobs SJ, Escalona M, Mohan M, Fairbairn C, Beraut E, Nguyen O, Toffelmier E, Shaffer HB, Zapata F. Reference genome of the color polymorphic desert annual plant Linanthus parryae. J. Heredity 113(6):712-721 [doi]
Henkhaus N, Busch W, Chen A, Colón-Carmona A, [...], Zapata F, Zemenick A, Stern DB. Removing Systemic Barriers to Equity, Diversity, and Inclusion: Report of the 2019 Plant Science Research Network workshop "Inclusivity in the Plant Sciences". Plant Direct e432 [doi]
Grundler MC, Rabosky DL, Zapata F. Fast likelihood calculations for automatic identification of among-lineage macroevolutionary rate heterogeneity in continuous and discrete traits Systematic Biology 71(6):1307-1318 [doi][repo]
Landis MJ, Quintero I, Muñoz MM, Zapata F, Donoghue MJ. Phylogenetic inference of where species spread or split across barriers. Proceedings of the National Academy of Sciences, USA 119 (13):e2116948119 [doi][repo]
Munro C, Zapata F, Siebert S, Howison M, Dunn CW. Evolution of gene expression across species and specialized zooids in Siphonophora Molecular Biology and Evolution 39(2):msac027 [doi][repo]
Mabry ME, Zapata F, Paul DL, O'Connor PM, Soltis PS, Blackburn DC, Simmons NB. Monographs as a nexus for building extended specimens networks using persistent identifiers. Bulletin of the Society of Systematic Biologists 1(1):8323 [doi]
2021
Jacobs SJ, Grundler MC, Henriquez CL, Zapata F. An integrative genomic and phenomic analysis to investigate the nature of plant species in Escallonia (Escalloniaceae). Scientific Reports 11:24013 [doi][repo]
Aburto-Oropeza O, Burelo-Ramos CM, Ezcurra E, Ezcurra P, Henriquez CL, Vanderplank S, Zapata F. Relict inland mangrove ecosystem reveals last interglacial sea levels. Proceedings of the National Academy of Sciences, USA 118 (41):e2024518118 [doi][repo]
Cadena CD, Zapata F. The genomic revolution and species delimitation in birds (and other organisms): why phenotypes should not be overlooked Ornithology 138(2):ukaa069 [doi]
Singhal S, Roddy A, DiVittorio C, Sanchez-Amaya A, Henriquez CL, Brodersen CR, Fehlberg S, Zapata F. Diversification, disparification, and hybridization in the desert shrubs Encelia. New Phytologist 230(3):1228-1241 [doi][repo]
Huang A, Howison M, Zapata F, Lawrence CE, Dunn CW. Revising transcriptome assemblies with phylogenetic information. PLOS ONE 16(1):e0244202 [doi][repo]
2020
DiVittorio CD, Singhal S, Roddy A, Zapata F, Ackerly DD, Baldwin BG, Brodersen CR, Búrquez A, Fine PVA, Padilla Flores M, Solis E, Morales-Villavicencio J, Morales-Arce D, Kyhos DW. Natural selection maintains species despite frequent hybridization in the desert shrub Encelia. Proceedings of the National Academy of Sciences, USA 117(52):33373-33383 [doi][repo]
Henkhaus NA, Bartlett ME, Gang DR, Grumet R, [...], Zapata F, Stern DB. Plant Science Decadal Vision 2020-2030: Reimagining the Potential of Plants for a Healthy and Sustainable Future. Plant Direct 1:24 [doi]
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